Lior Pachter

University of California, Berkeley ORCID: 0000-0002-9164-6231

6

h-index

6

Publications

41,925

Citations

Publications

6 shown

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell , Brian A. Williams , Geo Pertea +6 more

2010 Nature Biotechnology 15997 citations

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray , Harold Pimentel , Páll Melsted +1 more

2016 Nature Biotechnology 10114 citations

Improving RNA-Seq expression estimates by correcting for fragment bias

Adam Roberts , Cole Trapnell , Julie Donaghey +2 more

2011 Genome biology 1761 citations

Streaming fragment assignment for real-time analysis of sequencing experiments

Adam Roberts , Lior Pachter

2012 Nature Methods 1099 citations

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell , Adam Roberts , Loyal A. Goff +7 more

2012 Nature Protocols 12538 citations

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

Sabbi Lall , Dominic Grün , Azra Krek +12 more

2006 Current Biology 416 citations

Frequent Co-Authors

Cole Trapnell

University of Washington

Brian A. Williams

California Institute of Technology

Geo Pertea

University of Maryland, College Park

A Mortazavi

California Institute of Technology

Gordon Kwan

California Institute of Technology

Marijke J. van Baren

Washington University in St. Louis

Researcher Info

h-index: 6
Publications: 6
Citations: 41,925
Institution: University of California, Berkeley

External Links

ORCID Profile Google Scholar

Identifiers

ORCID: 0000-0002-9164-6231

Impact Metrics

h-index 6

h-index: Number of publications with at least h citations each.