An application of statistics to comparative metagenomics

Keywords

MetagenomicsBiologyComputational biologyEcologyEcosystemBioinformaticsGeneGenetics

Affiliated Institutions

San Diego State University US

Related Publications

PICRUSt2 for prediction of metagenome functions

Gavin M. Douglas , Vincent J. Maffei , Jesse Zaneveld +5 more

2020 Nature Biotechnology 5565 citations

Simera: Modelling the PCR Process to Simulate Realistic Chimera Formation

Ben Nichols , Christopher Quince

Abstract Polymerase Chain Reaction (PCR) is the principal method of amplifying target DNA regions and, as such, is of great importance when performing microbial diversity studie...

2016 bioRxiv (Cold Spring Harbor Laboratory) 4 citations

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich , Sergey Nurk , Dmitry Antipov +13 more

The lion's share of bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced using existing technologies. A major goal of single-cell gen...

2012 Journal of Computational Biology 25356 citations

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Hamidreza Chitsaz , Joyclyn Yee-Greenbaum , Glenn Tesler +12 more

2011 Nature Biotechnology 222 citations

eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale

Carlos P. Cantalapiedra , Ana Hernández-Plaza , Ivica Letunić +2 more

Abstract Even though automated functional annotation of genes represents a fundamental step in most genomic and metagenomic workflows, it remains challenging at large scales. He...

2021 Molecular Biology and Evolution 3673 citations

Publication Info

Year: 2006
Type: article
Volume: 7
Issue: 1
Pages: 162-162
Citations: 155
Access: Closed

External Links

View on DOI.org

Social Impact

Altmetric

An application of statistics to comparative metagenomics

PlumX Metrics

Social media, news, blog, policy document mentions

Citation Metrics

155

OpenAlex

Cite This

APA Style

                            
                                    Beltrán Rodriguez-Brito, 
                                
                                    Forest Rohwer, 
                                
                                    Robert A. Edwards
                                
                            (2006). 
                            An application of statistics to comparative metagenomics. 
                            BMC Bioinformatics
                            , 7
                            (1)
                            , 162-162.
                            https://doi.org/10.1186/1471-2105-7-162

Identifiers

DOI: 10.1186/1471-2105-7-162