Abstract
Abstract Summary: ENDscript is a web server grouping popular programs such as BLAST, Multalin and DSSP. It uses as query the co-ordinates file of a protein in Protein Data Bank format and generates PostScript and png figures showing: residues conserved after a multiple alignment against homologous sequences, secondary structure elements, accessibility, hydropathy and intermolecular contacts. Thus, the user can relate quickly 1D, 2D and 3D information of a protein of known structure. Availability: http://genopole.toulouse.inra.fr/ENDscript Contact: p.gouet@ibcp.fr * To whom correspondence should be addressed.
Keywords
Computer scienceProtein Data BankWorkflowSequence alignmentFile formatSequence (biology)Multiple sequence alignmentComputational biologyProtein structureWeb siteInformation retrievalPeptide sequenceDatabaseWorld Wide WebBiologyGeneticsThe Internet
MeSH Terms
Amino Acid SequenceData DisplayDatabase Management SystemsDatabasesFactualDatabasesProteinInformation Storage and RetrievalInternetMolecular Sequence DataProteinsSequence AlignmentSequence AnalysisProtein
Affiliated Institutions
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Publication Info
- Year
- 2002
- Type
- article
- Volume
- 18
- Issue
- 5
- Pages
- 767-768
- Citations
- 55
- Access
- Closed
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Cite This
Patrice Gouet,
Emmanuel Courcelle
(2002).
ENDscript: a workflow to display sequence and structure information.
Bioinformatics
, 18
(5)
, 767-768.
https://doi.org/10.1093/bioinformatics/18.5.767
Identifiers
- DOI
- 10.1093/bioinformatics/18.5.767
- PMID
- 12050076