The rigorous computation of the molecular electric potential

Abstract

Abstract A method is presented for the rigorous computation of the electric potential of molecules of arbitrary shape, under the assumption of continuous linear dielectric media. The computational technique involves finding the distribution of induced polarization charge on the molecular surface, and proceeds by an application of the method of boundary elements. The surface, which separates the molecular interior (of low dielectric constant) from the highly polar solvent, is given a piece‐wise analytic representation as a collection of curvilinear elements. Given a set of internal fixed charges, the distribution of polarization‐charge is found as a continuous function over the surface elements, and the electric potential (including all polarization effects) is then easily computed at any point. The method is applied to a spherical interface, and to several small molecules of biological interest, including a hexapeptide. The resulting potentials show good convergence in all cases. The future application of the method to macromolecules is discussed.

Keywords

Affiliated Institutions

• City University of New York US
• Pennsylvania State University US
• Icahn School of Medicine at Mount Sinai US

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