Publications

Minimap2: pairwise alignment for nucleotide sequences

Abstract Motivation Recent advances in sequencing technologies promise ultra-long reads of ∼100 kb in average, full-length mRNA or cDNA reads in high throughput and genomic cont...

Raman Spectrum of Graphene and Graphene Layers

Graphene is the two-dimensional building block for carbon allotropes of every other dimensionality. We show that its electronic structure is captured in its Raman spectrum that ...

SURF: Speeded Up Robust Features

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Single-layer MoS2 transistors

A Multi-Modal Distributed Real-Time IoT System for Urban Traffic Control (Invited Paper)

Traffic congestion is one of the growing urban problem with associated problems like fuel wastage, loss of lives, and slow productivity. The existing traffic system uses program...

An Integrative Model Of Organizational Trust

Scholars in various disciplines have considered the causes, nature, and effects of trust. Prior approaches to studying trust are considered, including characteristics of the tru...

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Evaluating the Effectiveness of Large Language Models in Representing Textual Descriptions of Geometry and Spatial Relations (Short Paper)

This research focuses on assessing the ability of large language models (LLMs) in representing geometries and their spatial relations. We utilize LLMs including GPT-2 and BERT t...

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Reflecting on reflexive thematic analysis

Since initially writing on thematic analysis in 2006, the popularity of the method we outlined has exploded, the variety of TA approaches have expanded, and, not least, our thin...

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype