Publications

Fast gapped-read alignment with Bowtie 2

Gradient-based learning applied to document recognition

Multilayer neural networks trained with the back-propagation algorithm constitute the best example of a successful gradient based learning technique. Given an appropriate networ...

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Although genomewide RNA expression analysis has become a routine tool in biomedical research, extracting biological insight from such information remains a major challenge. Here...

The CES-D Scale

The CES-D scale is a short self-report scale designed to measure depressive symptomatology in the general population. The items of the scale are symptoms associated with depress...

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Cytoscape is an open source software project for integrating biomolecular interaction networks with high-throughput expression data and other molecular states into a unified con...

Designing complex, dynamic yet multi-functional materials and devices is challenging because the design spaces for these materials have numerous interdependent and often conflic...

Genetic algorithms in search, optimization, and machine learning

From the Publisher: This book brings together - in an informal and tutorial fashion - the computer techniques, mathematical tools, and research results that will enable both st...

UCSF Chimera—A visualization system for exploratory research and analysis

Abstract The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic se...

Going deeper with convolutions

We propose a deep convolutional neural network architecture codenamed Inception that achieves the new state of the art for classification and detection in the ImageNet Large-Sca...

A fast and elitist multiobjective genetic algorithm: NSGA-II

Multi-objective evolutionary algorithms (MOEAs) that use non-dominated sorting and sharing have been criticized mainly for: (1) their O(MN/sup 3/) computational complexity (wher...

EMBI

Requirements are an integral part of industry operation and projects. Not only do requirements dictate industrial operations, but they are used in legally binding contracts betw...