Publications

Protein complex prediction with AlphaFold-Multimer

While the vast majority of well-structured single protein chains can now be predicted to high accuracy due to the recent AlphaFold [1] model, the prediction of multi-chain prote...

Oxidative stress, aging, and diseases

Reactive oxygen and nitrogen species (RONS) are produced by several endogenous and exogenous processes, and their negative effects are neutralized by antioxidant defenses. Oxida...

The Human Transcription Factors

Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation

Array technologies have made it straightforward to monitor simultaneously the expression pattern of thousands of genes. The challenge now is to interpret such massive data sets....

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

Ultra-high-throughput sequencing is emerging as an attractive alternative to microarrays for genotyping, analysis of methylation patterns, and identification of transcription fa...

Reshaping Data with the<b>reshape</b>Package

This paper presents the reshape package for R, which provides a common framework for many types of data reshaping and aggregation. It uses a paradigm of 'melting' and 'casting',...

The FIRST Survey: Faint Images of the Radio Sky at Twenty Centimeters

view Abstract Citations (2408) References (28) Co-Reads Similar Papers Volume Content Graphics Metrics Export Citation NASA/ADS The FIRST Survey: Faint Images of the Radio Sky a...

Carbon Nanotube Actuators

Electromechanical actuators based on sheets of single-walled carbon nanotubes were shown to generate higher stresses than natural muscle and higher strains than high-modulus fer...

GLYCAM06: A generalizable biomolecular force field. Carbohydrates

Abstract A new derivation of the GLYCAM06 force field, which removes its previous specificity for carbohydrates, and its dependency on the AMBER force field and parameters, is p...

From Marrow to Brain: Expression of Neuronal Phenotypes in Adult Mice

After intravascular delivery of genetically marked adult mouse bone marrow into lethally irradiated normal adult hosts, donor-derived cells expressing neuronal proteins (neurona...

The Sloan Digital Sky Survey Photometric Camera

We have constructed a large format mosaic CCD camera for the Sloan Digital\nSky Survey. The camera consists of two arrays, a photometric array which uses\n30 2048 x 2048 SITe/Te...

Large-scale analysis of the human and mouse transcriptomes

High-throughput gene expression profiling has become an important tool for investigating transcriptional activity in a variety of biological samples. To date, the vast majority ...