Adam M. Phillippy

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Versatile and open software for comparing large genomes

GAGE: A critical evaluation of genome assemblies and assembly algorithms

New sequencing technology has dramatically altered the landscape of whole-genome sequencing, allowing scientists to initiate numerous projects to decode the genomes of previousl...

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Low-cost short read sequencing technology has revolutionized genomics, though it is only just becoming practical for the high-quality de novo assembly of a novel large genome. W...

Canu: scalable and accurate long-read assembly via adaptive <i>k</i> -mer weighting and repeat separation

Long-read single-molecule sequencing has revolutionized de novo genome assembly and enabled the automated reconstruction of reference-quality genomes. However, given the relativ...

Hybrid error correction and de novo assembly of single-molecule sequencing reads