Anna C. Obenauf

Supplementary Table S1 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>Sample-assay overview.</p>

Supplementary Figures S1-S9 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>Supplementary data depicted in Supplementary Figures S1-S9</p>

Figure 1 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 is associated with DPA. <b>A,</b> Overview of unbiased screening approach for detection of vertebrate-infecting viruses in targeted next-generation se...

Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer

Supplementary Table S12 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 consensus genomes.</p>

Figure 2 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 induces transformation <i>in vitro</i> and tumor growth <i>in vivo</i>. <b>A,</b> Growth curves of HPKs transduced with the fu...

Supplementary Table S10 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV abundance scores TCGA.</p>

Supplementary Table S5 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>FISH probes.</p>

Supplementary Table S8 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42- and HPV16-E6 BioID.</p>

Supplementary Table S9 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42- and HPV16-E7 BioID.</p>

Figure 3 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>Oncogenic HPVs induce a germ cell–like transcriptional program conserved throughout HPV-driven cancers. <b>A,</b> Overview of the random forest (RF) feature...

Supplementary Table S7 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 variant allele frequencies.</p>

Supplementary Table S13 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 genome sequence comparison.</p>

Supplementary Table S11 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>DEG HPV+ vs. HPV- CESC/HNSCC.</p>

Supplementary Table S2 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>Viral abundance scores in ViroCap assay.</p>

Supplementary Table S3 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>Viral genome coverage in ViroCap assay.</p>

Supplementary Table S4 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 integration sites in DPA.</p>

Supplementary Table S14 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 genome structural variants.</p>

Supplementary Table S6 from Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers

<p>HPV42 protein-coding mutations.</p>