Brian J. Haas

Next-generation characterization of the Cancer Cell Line Encyclopedia

UCHIME improves sensitivity and speed of chimera detection

Abstract Motivation: Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions (e.g. 16S rRNA or fungal Interna...

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

Full-length transcriptome assembly from RNA-Seq data without a reference genome

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Advancing RNA-Seq analysis

Trinity RNA-Seq assembler performance optimization

RNA-sequencing is a technique to study RNA expression in biological material. It is quickly gaining popularity in the field of transcriptomics. Trinity is a software tool that w...

DAGchainer: a tool for mining segmental genome duplications and synteny

Abstract Summary: Given the positions of protein-coding genes along genomic sequence and probability values for protein alignments between genes, DAGchainer identifies chains of...