Eric A. Franzosa

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

A Proteome-Scale Map of the Human Interactome Network

Multivariable association discovery in population-scale meta-omics studies

It is challenging to associate features such as human health outcomes, diet, environmental conditions, or other metadata to microbial community measurements, due in part to thei...

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Culture-independent analyses of microbial communities have progressed dramatically in the last decade, particularly due to advances in methods for biological profiling via shotg...

Gut microbiome structure and metabolic activity in inflammatory bowel disease

Species-level functional profiling of metagenomes and metatranscriptomes

Functional profiles of microbial communities are typically generated using comprehensive metagenomic or metatranscriptomic sequence read searches, which are time-consuming, pron...