Preliminary results in accelerating profile HMM search on FPGAs
Comparison between biosequences and probabilistic models is an increasingly important part of modern DNA and protein sequence analysis. The large and growing number of such mode...
Publications
5 shownDesigning Patterns and Profiles for Faster HMM Search
Profile HMMs are powerful tools for modeling conserved motifs in proteins. They are widely used by search tools to classify new protein sequences into families based on domain a...
Efficient large-scale sequence comparison by locality-sensitive hashing
Abstract Motivation: Comparison of multimegabase genomic DNA sequences is a popular technique for finding and annotating conserved genome features. Performing such comparisons e...
Designing patterns for profile HMM search
Abstract Motivation: Profile HMMs are a powerful tool for modeling conserved motifs in proteins. These models are widely used by search tools to classify new protein sequences i...
Glycan Foraging in Vivo by an Intestine-Adapted Bacterial Symbiont
Germ-free mice were maintained on polysaccharide-rich or simple-sugar diets and colonized for 10 days with an organism also found in human guts, Bacteroides thetaiotaomicron , f...
Frequent Co-Authors
Researcher Info
- h-index
- 5
- Publications
- 5
- Citations
- 1,490
- Institution
- University of Washington
External Links
Identifiers
- ORCID
- 0000-0002-4159-4226
Impact Metrics
h-index
5
h-index: Number of publications with at least h citations each.