Isolation and characterization of TayeBlu, a novel bacteriophage of <i>Azotobacter vinelandii</i>

Abstract

ABSTRACT Soil microbial communities drive global biogeochemical cycles and alter crop yields through nitrogen fixation. As agents of genetic mobility, mortality, and nutrient release, viruses have been shown to influence microbial community structure and activity in numerous marine and aquatic systems. However, their impacts on terrestrial ecosystems are less well understood, in part because few model phage-host systems have been established for soils. To fill this gap, we sought to develop a new model system for viral infection of nitrogen-fixing bacteria derived from agricultural soil. Here, we report the isolation, characterization, and sequencing of the novel bacteriophage TayeBlu, which infects the globally distributed aerobic soil bacterium Azotobacter vinelandii , a facultative diazotroph. TayeBlu was isolated from the rhizosphere of tomato plants in a farm greenhouse. We find that the availability of nitrogen to host cells strongly influences TayeBlu infection physiology at the level of adsorption kinetics, time to lysis, and burst size. Taxonomic and comparative genome analyses reveal that TayeBlu belongs to an understudied family in class Caudoviricetes in which a small core of structural and assembly genes has persisted through adaptive diversification on different bacterial hosts. IMPORTANCE Understanding the forces regulating soil microbial activity is critical for building accurate ecosystem models that can inform land-management strategies for mitigating climate risks and stabilizing global food supply. For agricultural sustainability, it is particularly important to understand the dynamics of nitrogen-fixing soil bacteria like Azotobacter vinelandii , a well-studied and globally distributed species whose activity promotes plant growth and soil fertility. To support detailed investigations of the impact of viruses on diazotroph ecosystem outputs, we isolated and investigated a novel soil virus that infects A. vinelandii . The resulting new phage-host system expands the limited toolkit of model experimental systems for soil viral studies. By enabling investigations of viral impacts on terrestrial nitrogen-fixing bacteria, this work sets the stage for future studies illuminating a critical but poorly understood aspect of soil ecology. Moreover, TayeBlu belongs to a novel viral family, and this study provides the first description of this family’s conserved features.

Affiliated Institutions

• Case Western Reserve University US

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