Novo Nordisk Foundation

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Proteins and their functional interactions form the backbone of the cellular machinery. Their connectivity network needs to be considered for the full understanding of biologica...

Tissue-based map of the human proteome

Protein expression across human tissues Sequencing the human genome gave new insights into human biology and disease. However, the ultimate goal is to understand the dynamic exp...

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

Abstract Cellular life depends on a complex web of functional associations between biomolecules. Among these associations, protein–protein interactions are particularly importan...

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

Abstract Much of the complexity within cells arises from functional and regulatory interactions among proteins. The core of these interactions is increasingly known, but novel i...

A metagenome-wide association study of gut microbiota in type 2 diabetes

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

eggNOG is a public database of orthology relationships, gene evolutionary histories and functional annotations. Here, we present version 5.0, featuring a major update of the und...

Richness of human gut microbiome correlates with metabolic markers

Gut microbiota in human metabolic health and disease

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

Protein networks have become a popular tool for analyzing and visualizing the often long lists of proteins or genes obtained from proteomics and other high-throughput technologi...