The InterPro protein families database: the classification resource after 15 years

Abstract

The InterPro database (http://www.ebi.ac.uk/interpro/) is a freely available resource that can be used to classify sequences into protein families and to predict the presence of important domains and sites. Central to the InterPro database are predictive models, known as signatures, from a range of different protein family databases that have different biological focuses and use different methodological approaches to classify protein families and domains. InterPro integrates these signatures, capitalizing on the respective strengths of the individual databases, to produce a powerful protein classification resource. Here, we report on the status of InterPro as it enters its 15th year of operation, and give an overview of new developments with the database and its associated Web interfaces and software. In particular, the new domain architecture search tool is described and the process of mapping of Gene Ontology terms to InterPro is outlined. We also discuss the challenges faced by the resource given the explosive growth in sequence data in recent years. InterPro (version 48.0) contains 36,766 member database signatures integrated into 26,238 InterPro entries, an increase of over 3993 entries (5081 signatures), since 2012.

Keywords

Affiliated Institutions

• Georgetown University US
• European Bioinformatics Institute GB
• SIB Swiss Institute of Bioinformatics CH
• J. Craig Venter Institute US
• Wellcome Trust GB
• Laboratoire de Biométrie et Biologie Evolutive FR
• Faculty (United Kingdom) GB
• European Molecular Biology Laboratory FR
• Université Claude Bernard Lyon 1 FR
• Georgetown University Medical Center US
• University College London GB

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