Publications

Optimal alignments in linear space

Space, not time, is often the limiting factor when computing optimal sequence alignments, and a number of recent papers in the biology literature have proposed space-saving stra...

Drug treatment options for the 2019-new coronavirus (2019-nCoV)

As of January 22, 2020, a total of 571 cases of the 2019-new coronavirus (2019-nCoV) have been reported in 25 provinces (districts and cities) in China. At present, there is no ...

fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

We have developed a new tool, called fastDNAml, for constructing phylogenetic trees from DNA sequences. The program can be run on a wide variety of computers ranging from Unix w...

Integrated Approaches to Long-TermStudies of Urban Ecological Systems

Biodiversity Conservation in Running Waters

Journal Article Biodiversity Conservation in Running Waters: Identifying the major factors that threaten destruction of riverine species and ecosystems Get access J. David Allan...

Organism Size, Life History, and N:P Stoichiometry

Superoxide Production by the Mitochondrial Respiratory Chain

This mini-review describes the role of different mitochondrial components in the formation of reactive oxygen species under normal and pathological conditions and the effect of ...

Predicting Species Invasions Using Ecological Niche Modeling: New Approaches from Bioinformatics Attack a Pressing Problem

O 3 February 1999, President Clinton signed an executive order dealing with invasive species in the United States. The order was designed to lay the foundation for a program “to...

Imaging of single molecule diffusion.

In recent years observations at the level of individual atoms and molecules became possible by microscopy and spectroscopy. Imaging of single fluorescence molecules has been ach...

Bias and artifacts in multitemplate polymerase chain reactions (PCR)

Some discrete-time SI, SIR, and SIS epidemic models

PMUT: a web-based tool for the annotation of pathological mutations on proteins

PMUT allows the fast and accurate prediction (approximately 80% success rate in humans) of the pathological character of single point amino acidic mutations based on the use of ...