Publications

Soft self-consistent pseudopotentials in a generalized eigenvalue formalism

A new approach to the construction of first-principles pseudopotentials is described. The method allows transferability to be improved systematically while holding the cutoff ra...

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

The Market for "Lemons": Quality Uncertainty and the Market Mechanism

I. Introduction, 488. — II. The model with automobiles as an example, 489. — III. Examples and applications, 492. — IV. Counteracting institutions, 499. — V. Conclusion, 500.

Qualitative evaluation and research methods

PART ONE: CONCEPTUAL ISSUES IN THE USE OF QUALITATIVE METHODS The Nature of Qualitative Inquiry Strategic Themes in Qualitative Methods Variety in Qualitative Inquiry Theoretica...

A Simple Sequentially Rejective Multiple Test Procedure

This paper presents a simple and widely ap- plicable multiple test procedure of the sequentially rejective type, i.e. hypotheses are rejected one at a tine until no further reje...

Full-length transcriptome assembly from RNA-Seq data without a reference genome

The value of the world's ecosystem services and natural capital

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor

Search and clustering orders of magnitude faster than BLAST

Abstract Motivation: Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. Results: UBLAS...

Generalized Linear Models