Publications

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

Distributed Optimization and Statistical Learning via the Alternating Direction Method of Multipliers

Mastering the game of Go with deep neural networks and tree search

Parallel Distributed Processing

What makes people smarter than computers? These volumes by a pioneering neurocomputing group suggest that the answer lies in the massively parallel architecture of the human min...

THE GENETICS OF <i>CAENORHABDITIS ELEGANS</i>

ABSTRACT Methods are described for the isolation, complementation and mapping of mutants of Caenorhabditis elegans, a small free-living nematode worm. About 300 EMS-induced muta...

Advances in prospect theory: Cumulative representation of uncertainty

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

UCHIME improves sensitivity and speed of chimera detection

Abstract Motivation: Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions (e.g. 16S rRNA or fungal Interna...

Volume of fluid (VOF) method for the dynamics of free boundaries

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

FastTree 2 allows the inference of maximum-likelihood phylogenies for huge alignments. FastTree 2 is freely available at http://www.microbesonline.org/fasttree.

An Analysis of Transformations

Summary In the analysis of data it is often assumed that observations y 1, y 2, …, yn are independently normally distributed with constant variance and with expectations specifi...

Evolutionary trees from DNA sequences: A maximum likelihood approach